Local environment and fragmentation by drought and damming shape different components of native and non-native fish beta diversity across pool refuges.

Pool refuges are critical for maintaining stream fish diversity in increasingly intermittent streams. Yet, the patterns and drivers of beta diversity of native and non-native fish in pool refuges remain poorly known. Focusing on Mediterranean streams, we decomposed beta diversity of native and non-native fish into richness difference (RichDiff) and species replacement (Repl), and local (LCBD, LCBDRichDiff and LCBDRepl) and species (SCBD) contributions. We assessed the influence of environmental and spatial factors associated with drought and damming fragmentations on beta diversity components and LCBDs, and of local species richness and occupancy on LCBDs and SCBD, respectively. Overall, non-native species showed a more limited occupancy of pool refuges than native fish. RichDiff dominated beta diversity, though it was influenced by drought and damming fragmentations for native fish and local environment for non-native fish. Repl for native fish was slightly influenced by local environment, but for non-native fish was largely driven by drought and damming, albeit with a contribution of local environment as well. LCBD and LCBDRichDiff increased in pools in low order streams for native fish and at low elevations for non-native fish, and with high or low species richness. SCBD was higher for native species with intermediated pool occupancy, but for non-native species with low occupancy. Our results suggest that stream fragmentation may drive native species loss and non-native species replacement in pool refuges, and that environmental filtering may shape non-native species loss. Pools in lower order streams harbouring unique species-rich or species-poor assemblages should be prioritize for conservation and restoration, respectively, and pools at low elevation with unique non-native assemblages should deserve control efforts. We encourage the partitioning of beta diversity and individual analysis of native and non-native fish in intermittent streams, which may be key in stressing the importance of pool refuges in safeguarding native fish diversity.

Global investigation of lake habitat coupling by fishes.

Habitat coupling, where consumers acquire resources from different habitats, plays an important role in ecosystem functioning. In this study, we provide a global investigation of lake habitat coupling by freshwater fishes between littoral (nearshore) and pelagic (open water) zones and elucidate the extent to which magnitude of coupling varies according to environmental context and consumer traits. We consider the influence of lake factors (surface area, depth, shoreline complexity, and annual temperature), relative trophic position of consumers, fish community species richness, and fish morphological traits on habitat coupling by fishes. Using a worldwide dataset consisting of fish stable isotope values (δ13C and δ15N), we developed an index of habitat coupling, and used Bayesian hierarchical and non-hierarchical beta regressions to estimate the effects of environmental lake context and morphological traits on habitat coupling by fishes. Our results show high rates of habitat coupling among fishes globally with marked taxonomic differences in the magnitude and variation. Habitat coupling was higher in lower elevation lakes and in regions characterized by relatively colder climates, whereas other environmental context factors had little or no effects on habitat coupling. Furthermore, habitat coupling was associated with several locomotion and feeding traits, but independent from species maximum body length. Overall, we highlight the prevalence of multiple resources supporting fish populations and suggest future research identify implications to ecosystem functioning that may result from alterations to habitat coupling by fishes.

Human pressures modulate climate-warming-induced changes in size spectra of stream fish communities.

Climate warming can negatively affect the body size of ectothermic organisms and, based on known temperature-size rules, tends to benefit small-bodied organisms. Our understanding of the interactive effects of climate warming and other environmental factors on the temporal changes of body size structure is limited. We quantified the annual trends in size spectra of 583 stream fish communities sampled for more than 20 years across France. The results show that climate warming steepened the slope of the community size spectrum in streams with limited impacts from other human pressures. These changes were caused by increasing abundance of small-bodied individuals and decreasing abundance of large-bodied individuals. However, opposite effects of climate warming on the size spectrum slopes were observed in streams facing high levels of other human pressures. This demonstrates that the effects of temperature on body size structure can depend on other human pressures, disrupting the natural patterns of size spectra in wild communities with potentially strong implications for the fluxes of energy and nutrients in ecosystems.

Multiple lines and levels of evidence for avian zoochory promoting fish colonization of artificial lakes.

Understanding how obligate freshwater organisms colonize seemingly isolated ecosystems has long fascinated ecologists. While recent investigations reveal that fish eggs can survive the digestive tract of birds and successfully hatch once deposited, evidence for avian zoochory in natura is still lacking. Here, we used a 'multiple lines and levels of evidence' approach to demonstrate possible bird-mediated colonization of lakes by the European perch (Perca fluviatilis). We studied a set of newly-formed and isolated artificial lakes that the public is either prohibited to access because of gravel extraction or allowed to access (mainly for angling). The motivating observation is that a large proportion of prohibited-access lakes (greater than 80%) were colonized by European perch even though stocking by anglers and managers never occurred. Three supplementary lines of evidence supported avian zoochory. First, European perch spawning occurs when waterfowl abundance is very high. Second, European perch lays sticky eggs at shallow depths where they can be eaten by waterfowls or attached to their bodies. Third, genetic analyses suggested that European perch actually migrate among lakes, and that distances moved match with daily flight range of foraging waterfowl. Together, multiple lines of evidence point to avian zoochory as a probable pathway for fish colonizing remote or newly-formed freshwater ecosystems.

The role of vital dietary biomolecules in eco-evo-devo dynamics.

The physiological dependence of animals on dietary intake of vitamins, amino acids, and fatty acids is ubiquitous. Sharp differences in the availability of these vital dietary biomolecules among different resources mean that consumers must adopt a range of strategies to meet their physiological needs. We review the emerging work on omega-3 long-chain polyunsaturated fatty acids, focusing predominantly on predator-prey interactions, to illustrate that trade-off between capacities to consume resources rich in vital biomolecules and internal synthesis capacity drives differences in phenotype and fitness of consumers. This can then feedback to impact ecosystem functioning. We outline how focus on vital dietary biomolecules in eco-eco-devo dynamics can improve our understanding of anthropogenic changes across multiple levels of biological organization.

Interactive effect of urbanization and flood in modulating microplastic pollution in rivers.

Freshwater ecosystems play an important role in transporting and accumulating microplastics. Spatial and temporal variability in microplastic pollution can create critical spots and moments of elevated pollution, however, the consequences of their interaction are still poorly understood. This study aimed to assess the interaction between urbanization and flood episodes on river microplastic pollution. The water surface was sampled in two sites of the Garonne River, upstream and downstream a large urban area, during two flood episodes. Samples were chemically digested to facilitate particles isolation, and microplastics (700 µm-5 mm) were characterized through infrared spectroscopy (ATR-FTIR). Microplastic concentration increased by 5-8 fold during flood episodes, driven by river discharge. This increase was more significant in the downstream site. During the flood, there was an overall increase of larger particles on water surface, but only in the downstream site microplastic colours and polymeric compositions significantly varied. Principal component analysis of infrared spectra from polyethylene microplastics revealed that the main variance in the spectral region corresponded to hydroxyl and carbonyl groups. The carbonyl content in microplastics was significantly higher for particles collected during the flood, likely indicating a higher level of degradation. Urbanization modulates freshwater microplastic pollution during floods, and changes in microplastic physicochemical profile should be further integrated within toxicity studies to evaluate risks potentially elevated to animal and human health.

Promoting lab culture to enhance academic resilience during crises.

The COVID-19 pandemic has heavily impacted academics' professional and personal lives, forcing many research groups (labs) to shift from an academic system primarily based on in-person work to an almost full-time remote workforce during lockdowns. Labs are generally characterized by a strong lab culture that underpins all research and social activities of its members. Lab culture traditionally builds on the pillars of in-person communication, knowledge sharing, and all social and professional activities that promote collaboration, team building, scientific productivity, and well-being. Here, we use the experience of our research group facing the COVID-19 pandemic to illustrate how proactively reinforcing lab culture and its positive outcomes have been essential to our lab when transitioning from an in-person to a remote lab environment, and through its ongoing evolution toward a hybrid remote/in-person model. We argue that the proactive promotion of lab culture in research groups can foster academic resilience during crises, helping research groups to maintain their capacity to conduct scientific activities while preserving a sustainable life/work balance and a healthy mental condition.

The importance of population heterogeneities in detecting social learning as the foundation of animal cultural transmission.

High levels of within-population behavioural variation can have drastic demographic consequences, thus changing the evolutionary fate of populations. A major source of within-population heterogeneity is personality. Nonetheless, it is still relatively rarely accounted for in social learning studies that constitute the most basic process of cultural transmission. Here, we performed in female mosquitofish (Gambusia holbrooki) a social learning experiment in the context of mate choice, a situation called mate copying (MC), and for which there is strong evidence that it can lead to the emergence of persistent traditions of preferring a given male phenotype. When accounting for the global tendency of females to prefer larger males but ignoring differences in personality, we detected no evidence for MC. However, when accounting for the bold-shy dichotomy, we found that bold females did not show any evidence for MC, while shy females showed significant amounts of MC. This illustrates how the presence of variation in personality can hamper our capacity to detect MC. We conclude that MC may be more widespread than we thought because many studies ignored the presence of within-population heterogeneities.

Growth-enhanced salmon modify stream ecosystem functioning.

Use of fast-growing domesticated and/or genetically modified strains of fish is becoming increasingly common in aquaculture, increasing the likelihood of deliberate or accidental introductions into the wild. To date, their ecological impacts on ecosystems remain to be quantified. Here, using a controlled phenotype manipulation by implanting growth hormone in juvenile Atlantic salmon (Salmo salar), we found that growth-enhanced fish display changes in several phenotypic traits known to be important for ecosystem functioning, such as habitat use, morphology and excretion rate. Furthermore, these phenotypic changes were associated with significant impacts on the invertebrate community and key stream ecosystem functions such as primary production and leaf-litter decomposition. These findings provide novel evidence that introductions of growth-enhanced fish into the wild can affect the functioning of natural ecosystems and represent a form of intraspecific invasion. Consequently, environmental impact assessments of growth-enhanced organisms need to explicitly consider ecosystem-level effects.

Protocol for microplastic pollution monitoring in freshwater ecosystems: Towards a high-throughput sample processing - MICROPLASTREAM.

Robust and reproducible quantification of microplastic pollution in freshwater ecosystems requires the processing of a large amount of samples collected in varying environmental conditions. Such samples are characterized by a high amount of organic matter compared to microplastics and are highly variable in terms of the quantity and the composition of matrices, requiring a standardized analytical protocol for sample treatment and analysis. However, two important and time-consuming steps for microplastic recovery are the elimination of organic matter and microscopic inspection of samples. Here, we developed and validated a protocol, targeting particles with length ranging from 700 µm to 5 mm, that includes a double-step digestion of organic matter, consisting of incubation with potassium hydroxide followed by hydrogen peroxide solutions, and two stereomicroscopic analyses. In addition, we developed several technical improvements allowing reducing the time needed to process samples, such as the design of an adapted filter-cap to improve the content transfer. The absence of physical and chemical alterations in the investigated microplastic pellets and the average reduction of 65.8% (± 9.59 SD) of organic matter in real samples demonstrated that our protocol is fit for purpose. We recommend a second stereomicroscopic analysis to avoid underestimating microplastic concentration and particle size distribution biased towards larger particles. When used for a large-scale monitoring of microplastic pollution, this protocol resulted in an estimated time of 38 h for one person for the treatment of a batch of 24 samples, allowing a higher throughput sample processing and reproducible quantification. • Protocol customization towards high-throughput sample processing • Double step digestion to improve organic matter elimination • Importance of stereomicroscopic analysis for microplastic recovery.

Microplastic in angling baits as a cryptic source of contamination in European freshwaters.

High environmental microplastic pollution, and its largely unquantified impacts on organisms, are driving studies to assess their potential entry pathways into freshwaters. Recreational angling, where many anglers release manufactured baits into freshwater ecosystems, is a widespread activity with important socio-economic implications in Europe. It also represents a potential microplastic pathway into freshwaters that has yet to be quantified. Correspondingly, we analysed three different categories of industrially-produced baits ('groundbait', 'boilies' and 'pellets') for their microplastic contamination (particles 700 µm to 5 mm). From 160 samples, 28 microplastics were identified in groundbait and boilies, with a mean concentration of 17.4 (± 48.1 SD) MP kg-1 and 6.78 (± 29.8 SD) mg kg-1, yet no microplastics within this size range were recorded in the pellets. Microplastic concentrations significantly differed between bait categories and companies, but microplastic characteristics did not vary. There was no correlation between microplastic contamination and the number of bait ingredients, but it was positively correlated with C:N ratio, indicating a higher contamination in baits with higher proportion of plant-based ingredients. We thus reveal that bait microplastics introduced accidentally during manufacturing and/or those originating from contaminated raw ingredients might be transferred into freshwaters. However, further studies are needed to quantify the relative importance of this cryptic source of contamination and how it influences microplastic levels in wild fish.

Intraspecific diversity loss in a predator species alters prey community structure and ecosystem functions.

Loss in intraspecific diversity can alter ecosystem functions, but the underlying mechanisms are still elusive, and intraspecific biodiversity-ecosystem function (iBEF) relationships have been restrained to primary producers. Here, we manipulated genetic and functional richness of a fish consumer (Phoxinus phoxinus) to test whether iBEF relationships exist in consumer species and whether they are more likely sustained by genetic or functional richness. We found that both genotypic and functional richness affected ecosystem functioning, either independently or interactively. Loss in genotypic richness reduced benthic invertebrate diversity consistently across functional richness treatments, whereas it reduced zooplankton diversity only when functional richness was high. Finally, losses in genotypic and functional richness altered functions (decomposition) through trophic cascades. We concluded that iBEF relationships lead to substantial top-down effects on entire food chains. The loss of genotypic richness impacted ecological properties as much as the loss of functional richness, probably because it sustains "cryptic" functional diversity.

Urbanization and hydrological conditions drive the spatial and temporal variability of microplastic pollution in the Garonne River.

Microplastic (MP) pollution represents a novel environmental pressure acting on freshwater ecosystems. Improving our understanding of the dynamics of MP pollution in freshwater ecosystems is therefore a prerequisite for managing and limiting this pollution. In this study, we quantified the spatial and temporal variability of MP (size range 700 µm - 5 mm) pollution in surface water in 14 sites located across the Garonne river catchment (Southwestern France, 6 in the main river and 8 tributaries). MP concentration averaged 0.15 particles.m-3 (± 0.46 SD) and strongly varied both in space and in time. We found that the spatial variation in MP concentration was driven by urbanization and that the temporal variation in MP concentration and MP size was driven by hydrological conditions, with higher concentrations and smaller particles sizes in warm seasons with low discharge. Polyethylene (44.5%), polystyrene (30.1%) and polypropylene (18.2%) were the main polymers and their proportion did not vary significantly across sampled sites. Particle color was associated with polymer type, with a high proportion of white particles in polystyrene. We also found a significant and negative relationship between MP size and the distance to the source in sites located in the main stream. MP pollution across watershed, from headwater tributaries to lowland rivers, is dynamic, and further studies are needed to improve the resolution of our knowledge of spatial and temporal patterns of MP pollution in freshwater ecosystems.

Stable Isotope Insights into Microplastic Contamination within Freshwater Food Webs.

Microplastic pollution and ingestion are ubiquitous phenomena in freshwater ecosystems. However, our understanding of the role of trophic niche in microplastic ingestion is still limited. Here, we quantified the level of microplastic (700 µm to 5 mm) contamination for macroinvertebrates and fish within the Garonne river. We then used stable isotope analyses (δ13C and δ15N) to quantify trophic niches. We first demonstrated that the abundance of ingested microplastics differed between macroinvertebrates and fish and was not significantly related to microplastic pollution. We then found that microplastic characteristics (shape, color, size, and polymer composition) differ between the abiotic (surface waters and sediments) and biotic (ingested by macroinvertebrates and fish) compartments. The abundance of ingested microplastics increased with the size of organisms in both fish and macroinvertebrates and tended to increase with trophic position in macroinvertebrates only. Finally, the origin of the resources consumed by fish significantly affected the abundance of microplastics ingested. Altogether, these results suggest the absence of microplastic bioaccumulation in freshwater food webs and the dominance of direct consumption, most likely accidentally. The use of stable isotope analyses is therefore crucial to improve our understanding of microplastic ingestion by wild organisms.

Ecosystem maturity modulates greenhouse gases fluxes from artificial lakes.

Lentic ecosystems play a major role in the global carbon cycling but the understanding of the environmental determinants of lake metabolism is still limited, notably in small artificial lakes. Here the effects of environmental conditions on lake metabolism and CO2 and CH4 emissions were quantified in 11 small artificial gravel pit lakes covering a gradient of ecosystem maturity, ranging from young oligotrophic to older, hypereutrophic lakes. The diffusive fluxes of CO2 and CH4 ranged from -30.10 to 37.78 mmol m-2 d-1 and from 3.05 to 25.45 mmol m-2 d-1 across gravel pit lakes, respectively. Nutrients and chlorophyll a concentrations were negatively correlated with CO2 concentrations and emissions but positively correlated with CH4 concentrations and emissions from lakes. These findings indicate that, as they mature, gravel pit lakes switch from heterotrophic to autotrophic-based metabolism and hence turn into CO2-sinks. In contrast, the emission of CH4 increased along the maturity gradient. As a result, eutrophication occurring during ecosystem maturity increased net emissions in terms of climate impact (CO2 equivalent) due to the higher contribution of CH4 emissions. Overall, mean CO2equivalent emission was 7.9 g m-2 d-1, a value 3.7 and 4.7 times higher than values previously reported in temperate lakes and reservoirs, respectively. While previous studies reported that lakes represent emitters of C to the atmosphere, this study highlights that eutrophication may reverse lake contribution to global C budgets. However, this finding is to be balanced with the fact that eutrophication also increased CH4 emissions and hence, enhanced the potential impact of these ecosystems on climate. Implementing mitigation strategies for maintaining intermediate levels of maturity is therefore needed to limit the impacts of small artificial waterbodies on climate. This could be facilitated by their small size and should be planned at the earliest stages of artificial lake construction.

Stable resource polymorphism along the benthic littoral-pelagic axis in an invasive crayfish.

Although intraspecific variability is now widely recognized as affecting evolutionary and ecological processes, our knowledge on the importance of intraspecific variability within invasive species is still limited. This is despite the fact that understanding the linkage between within-population morphological divergences and the use of different trophic or spatial resources (i.e., resource polymorphism) can help to better predict their ecological impacts on recipient ecosystems. Here, we quantified the extent of resource polymorphism within populations of a worldwide invasive crayfish species, Procambarus clarkii, in 16 lake populations by comparing their trophic (estimated using stable isotope analyses) and morphological characteristics between individuals from the littoral and pelagic habitats. Our results first demonstrated that crayfish occured in both littoral and pelagic habitats of seven lakes and that the use of pelagic habitat was associated with increased abundance of littoral crayfish. We then found morphological (i.e., body and chelae shapes) and trophic divergence (i.e., reliance on littoral carbon) among individuals from littoral and pelagic habitats, highlighting the existence of resource polymorphism in invasive populations. There was no genetic differentiation between individuals from the two habitats, implying that this resource polymorphism was stable (i.e., high gene flow between individuals). Finally, we demonstrated that a divergent adaptive process was responsible for the morphological divergence in body and chela shapes between habitats while difference in littoral reliance neutrally evolved under genetic drift. These findings demonstrated that invasive P. clarkii can display strong within-population phenotypic variability in recent populations, and this could lead to contrasting ecological impacts between littoral and pelagic individuals.

Phenotypic responses of invasive species to removals affect ecosystem functioning and restoration.

Reducing the abundances of invasive species by removals aims to minimize their ecological impacts and enable ecosystem recovery. Removal methods are usually selective, modifying phenotypic traits in the managed populations. However, there is little empirical evidence of how removal-driven changes in multiple phenotypic traits of surviving individuals of invasive species can affect ecosystem functioning and recovery. Overcoming this knowledge gap is highly relevant because individuals are the elemental units of ecological processes and so integrating individual-level responses into the management of biological invasions could improve their efficiency. Here we provide novel demonstration that removals by trapping, angling and biocontrol from lakes of the globally invasive crayfish Procambarus clarkii induced substantial changes in multiple phenotypic traits. A mesocosm experiment then revealed that these changes in phenotypic traits constrain recovery of basic ecosystem functions (decomposition of organic matter, benthic primary production) by acting in the opposite direction than the effects of reduced invader abundance. However, only minor ecological impacts of invader abundance and phenotypic traits variation remained a year after its complete eradication. Our study provides quantitative evidence to an original idea that removal-driven trait changes can dampen recovery of invaded ecosystems even when the abundance of invasive species is substantially reduced. We suggest that the phenotypic responses of invaders to the removal programme have strong effects on ecosystem recovery and should be considered within the management of biological invasions, particularly when complete eradication is not achievable.

Altered trophic interactions in warming climates: consequences for predator diet breadth and fitness.

Species interactions are central in predicting the impairment of biodiversity with climate change. Trophic interactions may be altered through climate-dependent changes in either predator food preferences or prey communities. Yet, climate change impacts on predator diet remain surprisingly poorly understood. We experimentally studied the consequences of 2°C warmer climatic conditions on the trophic niche of a generalist lizard predator. We used a system of semi-natural mesocosms housing a variety of invertebrate species and in which climatic conditions were manipulated. Lizards in warmer climatic conditions ate at a greater predatory to phytophagous invertebrate ratio and had smaller individual dietary breadths. These shifts mainly arose from direct impacts of climate on lizard diets rather than from changes in prey communities. Dietary changes were associated with negative changes in fitness-related traits (body condition, gut microbiota) and survival. We demonstrate that climate change alters trophic interactions through top-predator dietary shifts, which might disrupt eco-evolutionary dynamics.